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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv5_116890_qdme.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | bHLH | ||||||||
Protein Properties | Length: 187aa MW: 21144.9 Da PI: 7.0763 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 20.5 | 8.4e-07 | 12 | 65 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksL 54 +r ++++ + R+ri + + L +++P+ + +sk +s a+ e+A++YI +L Bv5_116890_qdme.t1 12 KRLEKSIAQKSWRNRITELCSDLTSIIPPqHF--QSKNmVSQADQIEQATNYIVEL 65 57788999999******************775..88889**************777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 8.994 | 11 | 65 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.7E-7 | 11 | 69 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.09E-7 | 12 | 81 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MKRKSDIPSS SKRLEKSIAQ KSWRNRITEL CSDLTSIIPP QHFQSKNMVS QADQIEQATN 60 YIVELRERVD NLNKSKEQLK LLVNQEETSI NQQNAILNDA TVANPRFPIV EVKDLGSSLA 120 VQLVIEQGYD IKLHEIIRVL EDEGAEVVNA TYSTSGNNII HTLHAKARSS RVGVEASRVY 180 ERLHDLV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010678747.1 | 1e-135 | PREDICTED: uncharacterized protein LOC104894259 | ||||
TrEMBL | A0A0J8F498 | 1e-135 | A0A0J8F498_BETVU; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 3e-18 | bHLH family protein |